Design and development of high performance swa cell design for local DNA sequence alignment / Syed Abdul Mutalib Al Junid Syed Abdul Rahman

Syed Abdul Rahman, Syed Abdul Mutalib Al Junid (2017) Design and development of high performance swa cell design for local DNA sequence alignment / Syed Abdul Mutalib Al Junid Syed Abdul Rahman. In: The Doctoral Research Abstracts. IGS Biannual Publication, 12 (12). Institute of Graduate Studies, UiTM, Shah Alam.

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Abstract

DNA sequence alignment is expected to help in revealing important information related to the human body, disease, genetic and other biological upon discovery of the sequence alignment. Moreover, there have been intensive efforts in improving the performance of the sequence alignment process via hardware-based acceleration using the Field Programmable Gate Array (FPGA). This implementation is becoming popular due to the flexibility of the acceleration design, the ability to reduce the execution cycle, parallel computational solutions, and the ability to increase the performance of alignment at the same time. The performance of the DNA sequence alignment system strongly depends on the algorithm, design architecture and accelerator performance. This study proposed three new DNA sequence alignment accelerator system cell design and architecture based on the Smith-Waterman Algorithm (SWA) named as the new Optimized SWA Linear Gap Penalty (OSL), Optimized SWA Affine Gap Penalty (OSA), and Optimized Recursive Variable Expansion SWA Linear Gap Penalty (ORSL).

Item Type: Book Section
Creators:
CreatorsEmail
Syed Abdul Rahman, Syed Abdul Mutalib Al JunidUNSPECIFIED
Subjects: L Education > LB Theory and practice of education > Higher Education > Dissertations, Academic. Preparation of theses > Malaysia
R Medicine > RB Pathology
Divisions: Institut Pengajian Siswazah (IPSis) : Institute of Graduate Studies (IGS)
Series Name: IGS Biannual Publication
Volume: 12
Number: 12
Item ID: 19938
Uncontrolled Keywords: Abstract; Abstract of thesis; Newsletter; Research information; Doctoral graduates; IPSis; IGS; UiTM
Last Modified: 11 Jun 2018 03:14
Depositing User: Staf Pendigitalan 2
URI: http://ir.uitm.edu.my/id/eprint/19938

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